Index

A

A() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method)

C

characterise_transient() (pyross.contactMatrix method) check_for_event() (pyross.stochastic.stochastic_integration method) CommonMethods (class in pyross.deterministic) compute_cess() (in module pyross.evidence)

compute_ess() (in module pyross.evidence) constant_contactMatrix() (pyross.contactMatrix.ContactMatrixFunction method) ContactMatrixFunction (class in pyross.contactMatrix) control_integration (class in pyross.control)

E

E() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method) evidence_laplace() (pyross.inference.SIR_type method)

evidence_path_sampling() (in module pyross.evidence) evidence_path_sampling_process_result() (in module pyross.evidence) evidence_smc() (in module pyross.evidence)

F

fill_params_dict() (pyross.inference.SIR_type method)

FIM() (pyross.inference.SIR_type method) FIM_det() (pyross.inference.SIR_type method)

G

generate_traceplot() (in module pyross.evidence) get_individual_contactMatrices() (pyross.contactMatrix.ContactMatrixFunction method)

get_mean_inits() (pyross.inference.SIR_type method) get_parameters() (in module pyross.evidence)

H

hessian() (pyross.inference.SIR_type method)

I

I() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method) Ia() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method) infer() (pyross.inference.SIR_type method) infer_control() (pyross.inference.SIR_type method) infer_mcmc() (pyross.inference.SIR_type method) infer_mcmc_process_result() (pyross.inference.SIR_type method)

infer_nested_sampling() (pyross.inference.SIR_type method) infer_nested_sampling_process_result() (pyross.inference.SIR_type method) infer_parameters() (pyross.inference.SIR_type method) integrate() (pyross.inference.SIR_type method) intervention_custom_temporal() (pyross.contactMatrix.ContactMatrixFunction method) interventions_temporal() (pyross.contactMatrix.ContactMatrixFunction method) interventions_threshold() (pyross.contactMatrix.ContactMatrixFunction method) Is() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method)

L

latent_evidence_laplace() (pyross.inference.SIR_type method) latent_FIM() (pyross.inference.SIR_type method) latent_FIM_det() (pyross.inference.SIR_type method) latent_get_parameters() (in module pyross.evidence) latent_hessian() (pyross.inference.SIR_type method) latent_infer() (pyross.inference.SIR_type method)

latent_infer_control() (pyross.inference.SIR_type method) latent_infer_mcmc() (pyross.inference.SIR_type method) latent_infer_mcmc_process_result() (pyross.inference.SIR_type method) latent_infer_nested_sampling() (pyross.inference.SIR_type method) latent_infer_nested_sampling_process_result() (pyross.inference.SIR_type method) latent_infer_parameters() (pyross.inference.SIR_type method) latent_param_slice() (pyross.inference.SIR_type method)

M

mcmc_inference() (pyross.inference.SIR_type method) mcmc_inference_process_result() (pyross.inference.SIR_type method) mcmc_latent_inference() (pyross.inference.SIR_type method) mcmc_latent_inference_process_result() (pyross.inference.SIR_type method) minus_logp_red() (pyross.inference.SIR_type method) Model (class in pyross.deterministic) (class in pyross.inference) (class in pyross.stochastic)

model_class_data() (pyross.deterministic.Model method) (pyross.deterministic.SppQ method) (pyross.stochastic.Model method) (pyross.stochastic.SppQ method)

N

nested_sampling_inference() (pyross.inference.SIR_type method) nested_sampling_inference_process_result() (pyross.inference.SIR_type method)

nested_sampling_latent_inference() (pyross.inference.SIR_type method) nested_sampling_latent_inference_process_result() (pyross.inference.SIR_type method)

O

obtain_minus_log_p() (pyross.inference.SIR_type method)

P

pyross.evidence (module)

R

R() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method)

resample() (in module pyross.evidence) robustness() (pyross.inference.SIR_type method)

S

S() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method) sample_gaussian() (pyross.inference.SIR_type method) sample_gaussian_latent() (pyross.inference.SIR_type method) sample_latent() (pyross.inference.SIR_type method) SEAIRQ (class in pyross.control) (class in pyross.deterministic) (class in pyross.forecast) (class in pyross.inference) (class in pyross.stochastic) SEAIRQ_latent (class in pyross.forecast) SEAIRQ_testing (class in pyross.stochastic) SEIR (class in pyross.control) (class in pyross.deterministic) (class in pyross.forecast) (class in pyross.inference) (class in pyross.stochastic) SEIR_latent (class in pyross.forecast) SEkIkR (class in pyross.control) (class in pyross.deterministic) sensitivity() (pyross.inference.SIR_type method) set_contact_matrix() (pyross.inference.SIR_type method) set_det_method() (pyross.inference.SIR_type method) set_det_model() (pyross.inference.SIR_type method) set_lyapunov_method() (pyross.inference.SIR_type method) set_params() (pyross.inference.SIR_type method) SIkR (class in pyross.control) (class in pyross.deterministic) (class in pyross.stochastic) simulate() (pyross.control.SEAIRQ method) (pyross.control.SEIR method) (pyross.control.SEkIkR method) (pyross.control.SIR method) (pyross.control.SIkR method) (pyross.deterministic.Model method) (pyross.deterministic.SEAIRQ method) (pyross.deterministic.SEIR method) (pyross.deterministic.SEkIkR method) (pyross.deterministic.SIR method) (pyross.deterministic.SIkR method) (pyross.deterministic.SppQ method) (pyross.forecast.SEAIRQ method), [1] (pyross.forecast.SEAIRQ_latent method), [1] (pyross.forecast.SEIR method), [1] (pyross.forecast.SEIR_latent method), [1] (pyross.forecast.SIR method), [1] (pyross.forecast.SIR_latent method), [1] (pyross.hybrid.SIR method) (pyross.stochastic.Model method) (pyross.stochastic.SIR method) (pyross.stochastic.SppQ method)

simulate_deterministic() (pyross.control.control_integration method) simulate_gillespie() (pyross.stochastic.stochastic_integration method) simulate_tau_leaping() (pyross.stochastic.stochastic_integration method) simulator() (pyross.deterministic.CommonMethods method) SIR (class in pyross.control) (class in pyross.deterministic) (class in pyross.forecast) (class in pyross.hybrid) (class in pyross.inference) (class in pyross.stochastic) SIR_latent (class in pyross.forecast) SIR_type (class in pyross.inference) SpatialContactMatrix (class in pyross.contactMatrix) Spp (class in pyross.deterministic) (class in pyross.inference) (class in pyross.stochastic) SppQ (class in pyross.deterministic) (class in pyross.inference) (class in pyross.stochastic) stochastic_integration (class in pyross.stochastic) Sx() (pyross.deterministic.CommonMethods method) (pyross.stochastic.stochastic_integration method)